deepof.visuals

General plotting functions for the deepof package.

Functions

animate_skeleton(coordinates, experiment_id)	Render a FuncAnimation object with embeddings and/or motion trajectories over time.
count_all_events(coordinates[, ...])	Counts all events in supervised or soft_counts dataset and returns a data table.
export_annotated_video(coordinates[, ...])	Export annotated videos from both supervised and unsupervised pipelines.
gantt_plotter(coordinates, gantt_matrix, ...)	Return a scatter plot of the passed projection.
get_roi_data(coordinates, table_dict, roi_number)	get data in Rois.
plot_distance_between_conditions(...[, ...])	Plot the distance between conditions across a growing time window.
plot_embeddings(coordinates[, embeddings, ...])	Return a scatter plot of the passed projection.
plot_enrichment(coordinates[, embeddings, ...])	Violin plots per cluster per condition.
plot_gantt(coordinates, instance_id[, ...])	Return a scatter plot of the passed projection.
plot_heatmaps(coordinates, bodyparts[, ...])	Plot heatmaps of the specified body parts (bodyparts) of the specified animal (i).
plot_mouse_roi_interaction(coordinates[, ...])	Plot mouse-ROI interaction over time as a polar plot or line chart with optional effect-size histogram.
plot_normative_log_likelihood(embeddings, ...)	Plot a bar chart with normative log likelihoods per experimental condition, and compute statistics.
plot_stationary_entropy(coordinates, ...[, ...])	Compute and plots transition stationary distribution entropy per condition.
plot_transitions(coordinates[, ...])	Compute and plots transition matrices for all data or per condition.
return_mouse_roi_interaction(coordinates[, ...])	Return binned statistics and effect sizes for mouse-ROI interaction over time.
return_supervised_summary(coordinates, ...)	Returns summary of supervised information
return_transitions(coordinates[, ...])	Returns data of plot_transitions with same Input options